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Plot diameter correction result

Source: R/DiameterCorrectionPlot.R
DiameterCorrectionPlot.Rd

Plot diameter correction result

Usage

DiameterCorrectionPlot(
  Data,
  OnlyCorrected = TRUE,
  CorCol = "Diameter_DataHarmonizationCor",
  SeveralWindows = TRUE
)

Arguments

Data

Dataset (data.frame or data.table) The dataset must contain the columns:

  • IdStem (character)

  • IdCensus (ordered factor)

  • Diameter (numeric)

  • DBHCor (numeric)

  • HOM (Height Of Measurement) (numeric)

  • HOMCor (Corrected Height Of Measurement) (numeric)

OnlyCorrected

TRUE: plot only corrected stems, FALSE: plot all stems (logical)

CorCol

Corrected column name (character)

SeveralWindows

TRUE: return each page in a new window (better visualisation in Rstudio), FALSE: return each page in the same window (needed to save all the pages) (logical)

Value

The plots of the initial diameter values and proposed corrections, by IdStem.

Examples


if (FALSE) {
# pdf("DiameterCorrectionPlots_TestData.pdf", width = 25, height = 10)

 data(TestData)

TestData$HOM[1:3] <- c(0.5,1.5,NA)
TestData$Diameter[1:3] <- TestData$Diameter[1:3] + c(2,-2,0)
TestData$Diameter[21:23] <- c(31,91,14)

Rslt <- DiameterCorrection(
 TestData,
  WhatToCorrect = c("POM change","Abnormal growth"),
   CorrectionType = c("phylo"),
    MinIndividualNbr = 1)
DiameterCorrectionPlot(Rslt, OnlyCorrected = TRUE, SeveralWindows = FALSE)

# dev.off()
}